The Paper Feed

A feed of Bayesian network related papers, articles, books and research that we happen across and find of interest

Evaluating the Weighted Sum Algorithm for Estimating Conditional Probabilities in Bayesian Networks

Baker, S. and Mendes, E.
2010
The primary challenge in constructing a Bayesian Network (BN) is acquiring its Conditional Probability Tables (CPTs). CPTs can be elicited from domain experts; however, they scale exponentially in size, thus making their elicitation very time consuming and costly. Das [1] proposed a solution to this problem using the weighted sum algorithm (WSA). In this paper we present two empirical studies that evaluates the WSA's efficiency and accuracy, we also describe an extension for the algorithm to deal with one of its shortcomings. Our results show that the estimates obtained using the WSA were highly accurate and make significant reductions in elicitation.
Posted 2 Nov 2018 · Open Link · Link

A Bayesian network based learning system for modelling faults in large-scale manufacturing

Carbery, C.M. and Woods, R. and Marshall, A.H.
2018
Manufacturing companies can benefit from the early prediction and detection of failures to improve their product yield and reduce system faults through advanced data analytics. Whilst an abundance of data on their processing systems exist, they face difficulties in using it to gain insights to improve their systems. Bayesian networks (BNs) are considered here for diagnosing and predicting faults in a large manufacturing dataset from Bosch. Whilst BN structure learning has been performed traditionally on smaller sized data, this work demonstrates the ability to learn an appropriate BN structure for a large dataset with little information on the variables, for the first time. This paper also demonstrates a new framework for creating an appropriate probabilistic model for the Bosch dataset through the selection of statistically important variables on the response; this is then used to create a BN network which can be used to answer probabilistic queries and classify products based on changes in the sensor values in the production process.
Posted 1 Nov 2018 · Open Link · Link

Partial Least Squares Discriminant Analysis and Bayesian Networks for Metabolomic Prediction of Childhood Asthma

Kelly, R.S. and McGeachie, M.J. and Lee-Sarwar, K.A. and Kachroo, P. and Chu, S.H. and Virkud, Y.V. and Huang, M. and Litonjua, A.A. and Weiss, S.T. and Lasky-Su, J.
2018
To explore novel methods for the analysis of metabolomics data, we compared the ability of Partial Least Squares Discriminant Analysis (PLS-DA) and Bayesian networks (BN) to build predictive plasma metabolite models of age three asthma status in 411 three year olds (n = 59 cases and 352 controls) from the Vitamin D Antenatal Asthma Reduction Trial (VDAART) study. The standard PLS-DA approach had impressive accuracy for the prediction of age three asthma with an Area Under the Curve Convex Hull (AUCCH) of 81%. However, a permutation test indicated the possibility of overfitting. In contrast, a predictive Bayesian network including 42 metabolites had a significantly higher AUCCH of 92.1% (p for difference < 0.001), with no evidence that this accuracy was due to overfitting. Both models provided biologically informative insights into asthma; in particular, a role for dysregulated arginine metabolism and several exogenous metabolites that deserve further investigation as potential causative agents. As the BN model outperformed the PLS-DA model in both accuracy and decreased risk of overfitting, it may therefore represent a viable alternative to typical analytical approaches for the investigation of metabolomics data.
Posted 30 Oct 2018 · Open Link · Link

Risk Assessment of Underground Subway Stations to Fire Disasters Using Bayesian Network

Wu, J. and Hu, Z. and Chen, J. and Li, Z.
2018
Subway station fires often have serious consequences because of the high density of people and limited number of exits in a relatively enclosed space. In this study, a comprehensive model based on Bayesian network (BN) and the Delphi method is established for the rapid and dynamic assessment of the fire evolution process, and consequences, in underground subway stations. Based on the case studies of typical subway station fire accidents, 28 BN nodes are proposed to represent the evolution process of subway station fires, from causes to consequences. Based on expert knowledge and consistency processing by the Delphi method, the conditional probabilities of child BN nodes are determined. The BN model can quantitatively evaluate the factors influencing fire causes, fire proof/intervention measures, and fire consequences. The results show that the framework, combined with Bayesian network and the Delphi method, is a reliable tool for dynamic assessment of subway station fires. This study could offer insights to a more realistic analysis for emergency decision-making on fire disaster reduction, since the proposed approach could take into account the conditional dependency in the fire propagation process and incorporate fire proof/intervention measures, which is helpful for resilience and sustainability promotion of underground facilities.
Posted 29 Oct 2018 · Open Link · Link

Improving the analysis of dependable systems by mapping fault trees into Bayesian networks

Bobbio, A. and Portinale, L. and Minichino, M. and Ciancamerla, E.
2001
Bayesian Networks (BN) provide a robust probabilistic method of reasoning under uncertainty. They have been successfully applied in a variety of real-world tasks but they have received little attention in the area of dependability. The present paper is aimed at exploring the capabilities of the BN formalism in the analysis of dependable systems. To this end, the paper compares BN with one of the most popular techniques for dependability analysis of large, safety critical systems, namely Fault Trees (FT). The paper shows that any FT can be directly mapped into a BN and that basic inference techniques on the latter may be used to obtain classical parameters computed from the former (i.e. reliability of the Top Event or of any sub-system, criticality of components, etc). Moreover, by using BN, some additional power can be obtained, both at the modeling and at the analysis level. At the modeling level, several restrictive assumptions implicit in the FT methodology can be removed and various kinds of dependencies among components can be accommodated. At the analysis level, a general diagnostic analysis can be performed. The comparison of the two methodologies is carried out by means of a running example, taken from the literature, that consists of a redundant multiprocessor system.
Posted 26 Oct 2018 · Open Link · Link

Modeling interrelationships between health behaviors in overweight breast cancer survivors: Applying Bayesian networks

Xu, Selene AND Thompson, Wesley AND Kerr, Jacqueline AND Godbole, Suneeta AND Sears, Dorothy D. AND Patterson, Ruth AND Natarajan, Loki
2018
Obesity and its impact on health is a multifaceted phenomenon encompassing many factors, including demographics, environment, lifestyle, and psychosocial functioning. A systems science approach, investigating these many influences, is needed to capture the complexity and multidimensionality of obesity prevention to improve health. Leveraging baseline data from a unique clinical cohort comprising 333 postmenopausal overweight or obese breast cancer survivors participating in a weight-loss trial, we applied Bayesian networks, a machine learning approach, to infer interrelationships between lifestyle factors (e.g., sleep, physical activity), body mass index (BMI), and health outcomes (biomarkers and self-reported quality of life metrics). We used bootstrap resampling to assess network stability and accuracy, and Bayesian information criteria (BIC) to compare networks. Our results identified important behavioral subnetworks. BMI was the primary pathway linking behavioral factors to glucose regulation and inflammatory markers; the BMI-biomarker link was reproduced in 100% of resampled networks. Sleep quality was a hub impacting mental quality of life and physical health with > 95% resampling reproducibility. Omission of the BMI or sleep links significantly degraded the fit of the networks. Our findings suggest potential mechanistic pathways and useful intervention targets for future trials. Using our models, we can make quantitative predictions about health impacts that would result from targeted, weight loss and/or sleep improvement interventions. Importantly, this work highlights the utility of Bayesian networks in health behaviors research.
Posted 25 Oct 2018 · Link

An explication of uncertain evidence in Bayesian networks: likelihood evidence and probabilistic evidence

Mrad, A.B. and Delcroix, V. and Piechowiak, S. and Leicester, P. and Abid, M.
2015
This paper proposes a systematized presentation and a terminology for observations in a Bayesian network. It focuses on the three main concepts of uncertain evidence, namely likelihood evidence and fixed and not-fixed probabilistic evidence, using a review of previous literature. A probabilistic finding on a variable is specified by a local probability distribution and replaces any former belief in that variable. It is said to be fixed or not fixed regarding whether it has to be kept unchanged or not after the arrival of observation on other variables. Fixed probabilistic evidence is defined by Valtorta et al. (J Approx Reason 29(1):71–106 2002) under the name soft evidence, whereas the concept of not-fixed probabilistic evidence has been discussed by Chan and Darwiche (Artif Intell 163(1):67–90 2005). Both concepts have to be clearly distinguished from likelihood evidence defined by Pearl (1988), also called virtual evidence, for which evidence is specified as a likelihood ratio, that often represents the unreliability of the evidence. Since these three concepts of uncertain evidence are not widely understood, and the terms used to describe these concepts are not well established, most Bayesian networks engines do not offer well defined propagation functions to handle them. Firstly, we present a review of uncertain evidence and the proposed terminology, definitions and concepts related to the use of uncertain evidence in Bayesian networks. Then we describe updating algorithms for the propagation of uncertain evidence. Finally, we propose several results where the use of fixed or not-fixed probabilistic evidence is required.
Posted 24 Oct 2018 · Open Link · Link

Impact of drivers of change, including climatic factors, on the occurrence of chemical food safety hazards in fruits and vegetables: a Bayesian Network approach

Yamine Bouzembrak and Hans J.P. Marvin
2018
The presence and development of many food safety risks are driven by factors within and outside the food supply chain, such as climate, economy and human behaviour. The interactions between these factors and the supply chain are complex and a system or holistic approach is needed to reveal cause-effect relationships and to be able to perform effective mitigation actions to minimise food safety risks. In this study, we demonstrate the potential of the Bayesian Network (BN) approach to identify and quantify the strength of relationships and interactions between the presence of food safety hazards as reported in Rapid Alert System for Food and Feed (RASFF) for fruits and vegetables on one hand, and climatic factors, economic and agronomic data on the other. To this end, all food safety notifications in RASFF (i.e. 3,781 notifications) on fruits and vegetables originating from India, Turkey and the Netherlands were collected for the period 2005-2015. In addition, climatic factors (e.g. temperature, precipitation), agricultural factors (e.g. pesticide use, fertilizer use) and economic factors (e.g. price, production volumes) were collected for the countries of origin of the product concurrent with the period of food safety notification in RASFF. A BN was constructed with 80% of the collected data using a machine-learning algorithm and optimised for each specific hazard category. The performance of the developed BN was determined in terms of accuracy of prediction of the hazard category in the evaluation set comprising 20% of the total data. The accuracy was high (95%) and the following factors contributed most: product category, notifying country, yearly production, number of notification, maximal residue level (MRL) ratio, country of origin, and the annual agricultural budget of a country. The assessment of the impact of interactions within the BN showed a significant interaction between the presence and level of a hazard as reported in RASFF and several drivers of change but at present, no definite conclusions can be drawn regarding the climatic factors and food safety hazards.
Posted 22 Oct 2018 · Link

Modelling Electronic Trust Using Bayesian Networks

Jelena D. Velimirovic and Aleksandar Janjic and Lazar Z. Velimirovic
2018
This paper discusses importance of trust in the context of digital economy. Even though electronic commerce continues to grow worldwide due to many of its advantages, it has not been fully adopted yet. The reason for some barriers in adopting e-commerce lies in potential customers who still perceive online setting as quite risky. Customers who have concerns related to sellers’ IT infrastructure resilience, and secured and safe personal data, will hardly ever engage in e-transactions. The nature of trust is very subjective, complex and multi-faceted. Trust issues are not present only between buyers and sellers, but also between suppliers and sellers, trust in recommendations and references on certain products, etc. In this paper authors propose modelling trust using Bayesian networks and provide an illustrative example which is typical in online transactions.
Posted 21 Oct 2018 · Link

Probabilistic Age Classification with Bayesian Networks

Emanuele Sironi and Vilma Pinchi and Franco Taroni
2018
In the past few decades, the rise of criminal, civil and asylum cases involving young people lacking valid identification documents has generated an increase in the demand of age estimation. The chronological age or the probability that an individual is older or younger than a given age threshold are generally estimated by means of some statistical methods based on observations performed on specific physical attributes. Among these statistical methods, those developed in the Bayesian framework allow the user to provide coherent and transparent assignments which fulfill forensic and medico-legal purposes. The application of the Bayesian approach is facilitated by using probabilistic graphical tools, such as Bayesian networks. The aim of this work is to test the performances of the Bayesian network for age estimation recently presented in scientific literature in classifying individuals as older or younger than 18 years of age. For these exploratory analyses, a sample related to the ossification status of the medial clavicular epiphysis available in scientific literature was used. Results obtained in the classification are extremely promising: in the criminal context, the Bayesian network achieved, on the average, a rate of correct classifications of approximatively 97%, whilst in the civil context, the rate is, on the average, close to the 88%. These results encourage the continuation of the development and the testing of the method in order to support its practical application in casework.
Posted 21 Oct 2018 · Open Link · Link

Reducing COPD Readmissions: A Causal Bayesian Network Model - IEEE Journals

S. Lee and S. Wang and P. Bain and C. Baker and T. Kundinger and C. Sommers and J. Li
2018
This paper introduces a causal Bayesian network model to study readmissions reduction for chronic obstructive pulmonary disease (COPD) patients. The model employs a Bayesian network learning method and adopts domain knowledge. Using this model, we analyze the impacts of critical variables on a patient's readmission risk by manipulation of such variables. Through this analysis, effective intervention options to reduce readmission can be identified, which can provide a quantitative tool for designing personalized interventions to reduce COPD readmissions.
Posted 21 Oct 2018 · Link